Publications

Preprints

Fardet T, Giannakakis E, Paulun L, and Levina A. (submitted). Revising clustering and small-worldness in brain networks. ArXiv.
```
@article{fardet2024revising,
  title={Revising clustering and small-worldness in brain networks},
  author={Fardet, Tanguy and Giannakakis, Emmanouil and Paulun, Lukas and Levina, Anna},
  journal={arXiv preprint arXiv:2401.15630},
  year={2024}
}
```
Vinogradov O, Giannakakis E, Buendia V, Uysal B, Ron S, Weinreb E, Schwarz N, Lerche H, Moses E, and Levina A. (submitted). Effective excitability captures network dynamics across development and phenotypes. BioRxiv.
```
@article{Vinogradov2024effective,
title = {Effective excitability captures network dynamics across development and phenotypes},
author = {Vinogradov, Oleg and Giannakakis, Emmanouil and Buendia, Victor and Uysal, Betuel and Ron, Shlomo and Weinreb, Eyal and Schwarz, Niklas and Lerche, Holger and Moses, Elisha and Levina, Anna},
journal = {bioRxiv},
year={2024}
}
```

Published

2024

Giannakakis E, Khajehabdollahi S, and Levina A. (2024). Network bottlenecks and task structure control the evolution of interpretable learning rules in a foraging agent. In Artificial Life
```
@article{giannakakis2024network,
  title={Network bottlenecks and task structure control the evolution of interpretable learning rules in a foraging agent},
  author={Giannakakis, Emmanouil and Khajehabdollahi, Sina and Levina, Anna},
  journal={Artificial Life},
  pages={1--18},
  year={2024},
  publisher={MIT Press 255 Main Street, 9th Floor, Cambridge, Massachusetts 02142, USA~…}
}
```
Giannakakis E, Vinogradov O, Buendia V, and Levina A. (2024). Structural influences on synaptic plasticity: the role of presynaptic connectivity in the emergence of E/I co-tuning. In PLOS Computational Biology.
```
@article{giannakakis2024structural,
  title={Structural influences on synaptic plasticity: The role of presynaptic connectivity in the emergence of E/I co-tuning},
  author={Giannakakis, Emmanouil and Vinogradov, Oleg and Buend{\'\i}a, Victor and Levina, Anna},
  journal={PLOS Computational Biology},
  volume={20},
  number={10},
  pages={e1012510},
  year={2024},
  publisher={Public Library of Science San Francisco, CA USA}
}
```

Hamidi M, Khajehabdollahi S, Giannakakis E, Schäfer T, Levina A, & Wu C. (2024). Modular Growth of Hierarchical Networks: Efficient, General, and Robust Curriculum Learning. In Proceedings of the 2024 Artificial Life Conference (ALIFE).

@inproceedings{hamidi2024modular,
  title = {Modular Growth of Hierarchical Networks: Efficient, General, and Robust Curriculum Learning},
  author = {Hamidi, Mani and Khajehabdollahi, Sina and Giannakakis, Emmanouil and Schäfer, Tim and Levina, Anna and Wu, Charley M.},
  year = {2024},
  keywords = {published},
  booktitle = {{Proceedings of the 2024 Artificial Life Conference (ALIFE)}},
  doi = {10.48550/arXiv.2406.06262},
  preprint = {https://arxiv.org/abs/2406.06262},
  pdf = {https://charleywu.github.io/downloads/hamidi2024modular.pdf}
}

Khajehabdollahi S, Zeraati R, Giannakakis E, Schäfer TJ, Martius G, and Levina A. (2024). Emergent mechanisms for long timescales depend on training curriculum and affect performance in memory tasks. In The Twelfth International Conference on Learning Representations.
```
@inproceedings{khajehabdollahi2023emergent,
  title={Emergent mechanisms for long timescales depend on training curriculum and affect performance in memory tasks},
  author={Khajehabdollahi, Sina and Zeraati, Roxana and Giannakakis, Emmanouil and Sch{\"a}fer, Tim Jakob and Martius, Georg and Levina, Anna},
  booktitle={The Twelfth International Conference on Learning Representations},
  year={2023}
}
```

2023

Giannakakis E, Khajehabdollahi S, and Levina A. (2023). Environmental variability and network structure determine the optimal plasticity mechanisms in embodied agents. In Proceedings of the 2023 Artificial Life Conference (ALIFE).
```
@inproceedings{giannakakis2023environmental,
  title={Environmental variability and network structure determine the optimal plasticity mechanisms in embodied agents},
  author={Giannakakis, Emmanouil and Khajehabdollahi, Sina and Levina, Anna},
  booktitle={Artificial Life Conference Proceedings 35},
  volume={2023},
  number={1},
  pages={22},
  year={2023},
  organization={MIT Press One Rogers Street, Cambridge, MA 02142-1209}
}
```
Khajehabdollahi S, Giannakakis E, Buendıa V, Martius G, and Levina A. (2023). Locally adaptive cellular automata for goal-oriented self-organization. In Proceedings of the 2023 Artificial Life Conference (ALIFE).
```
@inproceedings{khajehabdollahi2023locally,
  title={Locally adaptive cellular automata for goal-oriented self-organization},
  author={Khajehabdollahi, Sina and Giannakakis, Emmanouil and Buend{\'\i}a, Victor and Martius, Georg and Levina, Anna},
  booktitle={Artificial Life Conference Proceedings 35},
  volume={2023},
  number={1},
  pages={59},
  year={2023},
  organization={MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info~…}
}
```

2022

Khajehabdollahi S, Prosi J, Giannakakis E, Martius G, and Levina A. (2022) When to Be Critical? Performance and Evolvability in Different Regimes of Neural Ising Agents. In Artificial Life.
```
@article{khajehabdollahi2022critical,
  title={When to be critical? Performance and evolvability in different regimes of neural Ising agents},
  author={Khajehabdollahi, Sina and Prosi, Jan and Giannakakis, Emmanouil and Martius, Georg and Levina, Anna},
  journal={Artificial Life},
  volume={28},
  number={4},
  pages={458--478},
  year={2022},
  publisher={MIT Press}
}
```

2021

Khajehabdollahi S, Giannakakis E, Prosi J, and Levina A. (2021). Reservoir computing with self-organizing neural oscillators. In Proceedings of the 2021 Artificial Life Conference (ALIFE).
```
@inproceedings{khajehabdollahi2021reservoir,
  title={Reservoir computing with self-organizing neural oscillators},
  author={Khajehabdollahi, Sina and Giannakakis, Emmanouil and Prosi, Jan and Levina, Anna},
  booktitle={ALIFE 2021: The 2021 Conference on Artificial Life},
  year={2021},
  organization={MIT Press}
}
```
Prosi J, Khajehabdollahi S, Giannakakis E, Martius G, and Levina A. (2021). The dynamical regime and its importance for evolvability, task performance and generalization. In Proceedings of the 2021 Artificial Life Conference (ALIFE)..
```
@inproceedings{prosi2021dynamical,
  title={The dynamical regime and its importance for evolvability, task performance and generalization},
  author={Prosi, Jan and Khajehabdollahi, Sina and Giannakakis, Emmanouil and Martius, Georg and Levina, Anna},
  booktitle={ALIFE 2021: The 2021 Conference on Artificial Life},
  year={2021},
  organization={MIT Press}
}
```

2020

Giannakakis E, Han CE, Weber B, Hutchings F, and Kaiser M. (2020). Towards simulations of long-term behavior of neural networks: Modeling synaptic plasticity of connections within and between human brain regions. In Neurocomputing.
```
@article{giannakakis2020towards,
  title={Towards simulations of long-term behavior of neural networks: Modeling synaptic plasticity of connections within and between human brain regions},
  author={Giannakakis, Emmanouil and Han, Cheol E and Weber, Bernd and Hutchings, Frances and Kaiser, Marcus},
  journal={Neurocomputing},
  volume={416},
  pages={38--44},
  year={2020},
  publisher={Elsevier}
}
```
Giannakakis E, Hutchings F, Papasavvas CA, Han CE, Weber B, Zhang C, and Kaiser M. (2020). Computational modelling of the long-term effects of brain stimulation on the local and global structural connectivity of epileptic patients. In PLOS ONE.
```
@article{giannakakis2020computational,
  title={Computational modelling of the long-term effects of brain stimulation on the local and global structural connectivity of epileptic patients},
  author={Giannakakis, Emmanouil and Hutchings, Frances and Papasavvas, Christoforos A and Han, Cheol E and Weber, Bernd and Zhang, Chencheng and Kaiser, Marcus},
  journal={Plos one},
  volume={15},
  number={2},
  pages={e0221380},
  year={2020},
  publisher={Public Library of Science San Francisco, CA USA}
}
```